Publications Print Bardwell Speltz LJ, Lee SK, Shu Y, Tarasek MR, Trzasko JD, Foo TKF, Bernstein MA. Modeling and measurement of lead tip heating and resonant length for implanted, insulated wires. Magn Reson Med. 2024 Oct; 92 (4):1714-1727 Epub 2024 May 31 View PubMed Hage S, Kinkade S, Girard R, Flemming KD, Kim H, Torbey MT, Huang J, Huston J 3rd, Shu Y, Selwyn RG, Hart BL, Mabray MC, Feghali J, Sair HI, Narvid J, Lupo JM, Lee J, Stadnik A, Alcazar-Felix RJ, Shenkar R, Hobson N, DeBiasse D, Lane K, McBee NA, Treine K, Ostapkovich N, Wang Y, Thompson RE, Koenig JI, Carroll T, Hanley DF Jr, Awad IA. Trial Readiness of Cavernous Malformations With Symptomatic Hemorrhage, Part II: Biomarkers and Trial Modeling. Stroke. 2024 Jan; 55 (1):31-39 Epub 2023 Dec 22 View PubMed Flemming KD, Kim H, Hage S, Mandrekar J, Kinkade S, Girard R, Torbey M, Huang J, Huston J 3rd, Shu Y, Lanzino G, Selwyn R, Hart B, Mabray M, Feghali J, Sair HI, Narvid J, Lupo JM, Lee J, Stadnik A, Alcazar-Felix RJ, Shenkar R, Lane K, McBee N, Treine K, Ostapkovich N, Wang Y, Thompson R, Koenig JI, Carroll T, Hanley D, Awad I. Trial Readiness of Cavernous Malformations With Symptomatic Hemorrhage, Part I: Event Rates and Clinical Outcome. Stroke. 2024 Jan; 55 (1):22-30 Epub 2023 Dec 22 View PubMed Camerucci E, Elder BD, Shu Y, Messina SA, Gunter JL, Graff-Radford J, Jones DT, Botha H, Cutsforth-Gregory JK, Jack CR Jr, Huston J 3rd, Cogswell PM. Field strength difference in extent of artifacts induced by CERTAS Plus valves in patients with idiopathic normal pressure hydrocephalus. Neuroradiol J. 2023 Dec; 36 (6):665-673 Epub 2023 Apr 28 View PubMed Bardwell Speltz LJ, Shu Y, Watson RE, Trzasko JD, In MH, Gray EM, Halverson MA, Tarasek MR, Hua Y, Huston J 3rd, Cogswell PM, Foo TKF, Bernstein MA. Evaluation of a compact 3 T MRI scanner for patients with implanted devices. Magn Reson Imaging. 2023 Nov; 103:109-118 Epub 2023 July 17 View PubMed Meyer NK, Kang D, Ahmed Z, In MH, Shu Y, Huston J 3rd, Bernstein MA, Trzasko JD. Locally Low-Rank Denoising of Multi-Echo Functional MRI Data With Application in Resting-State Analysis. Top Magn Reson Imaging. 2023 Oct 4; 32 (5):37-49 Epub 2023 Oct 04 View PubMed Meyer NK, Kang D, Ahmed Z, In MH, Shu Y, Huston J 3rd, Bernstein MA, Trzasko JD. Locally Low-Rank Denoising of Multi-Echo Functional MRI Data With Application in Resting-State Analysis. Top Magn Reson Imaging. 2023 Oct 1; 32 (5):37-49 Epub 2023 Sept 27 View PubMed Meyer NK, Kang D, Black DF, Campeau NG, Welker KM, Gray EM, In MH, Shu Y, Huston Iii J, Bernstein MA, Trzasko JD. Enhanced clinical task-based fMRI metrics through locally low-rank denoising of complex-valued data. Neuroradiol J. 2023 Jun; 36 (3):273-288 Epub 2022 Sept 05 View PubMed Kang D, In MH, Jo HJ, Halverson MA, Meyer NK, Ahmed Z, Gray EM, Madhavan R, Foo TK, Fernandez B, Black DF, Welker KM, Trzasko JD, Huston J 3rd, Bernstein MA, Shu Y. Improved Resting-State Functional MRI Using Multi-Echo Echo-Planar Imaging on a Compact 3T MRI Scanner with High-Performance Gradients. Sensors (Basel). 2023 Apr 27; 23 (9) View PubMed In MH, Kang D, Jo HJ, Yarach U, Meyer NK, Trzasko JD, Huston J 3rd, Bernstein MA, Shu Y. Minimizing susceptibility-induced BOLD sensitivity loss in multi-band accelerated fMRI using point spread function mapping and gradient reversal. Phys Med Biol. 2023 Jan 9; 68 (2) Epub 2023 Jan 09 View PubMed Arani A, Schwarz CG, Wiste HJ, Weigand SD, Cogswell PM, Murphy MC, Trzasko JD, Gunter JL, Senjem ML, McGee KP, Shu Y, Bernstein MA, Huston J 3rd, Jack CR Jr, Alzheimer's Disease Neuroimaging Initiative. Left-Right Intensity Asymmetries Vary Depending on Scanner Model for FLAIR and T1 Weighted MRI Images. J Magn Reson Imaging. 2022 Sep; 56(3):917-927. Epub 2022 Feb 08. View PubMed Carr CM, Lane JI, Eckel LJ, Diehn FE, Kallmes DF, Carlson ML, Shu Y, Bernstein MA, Gunderson TM, Poling GL. Evaluation of hearing loss in young adults after exposure to 3.0T MRI with standard hearing protection. J Acoust Soc Am. 2022 Mar; 151 (3):1913 View PubMed Tarasek MR, Shu Y, Kang D, Tao S, Gray E, Huston J 3rd, Hua Y, Yeo DTB, Bernstein MA, Foo TK. Average SAR prediction, validation, and evaluation for a compact MR scanner head-sized RF coil. Magn Reson Imaging. 2022 Jan; 85:168-176 Epub 2021 Oct 16 View PubMed Camerucci E, Campeau NG, Trzasko JD, Gray EM, Bernstein MA, Cogswell PM, Shu Y, Foo TK, Huston J 3rd. Improved Brain MR Imaging from a Compact, Lightweight 3T Scanner with High-Performance Gradients. J Magn Reson Imaging. 2022 Jan; 55 (1):166-175 Epub 2021 June 28 View PubMed Singh NA, Arani A, Graff-Radford J, Senjem ML, Martin PR, Machulda MM, Schwarz CG, Shu Y, Cogswell PM, Knopman DS, Petersen RC, Lowe VJ, Jack CR Jr, Josephs KA, Whitwell JL. Distinct brain iron profiles associated with logopenic progressive aphasia and posterior cortical atrophy. Neuroimage Clin. 2022; 36:103161. Epub 2022 Aug 22. View PubMed Navaratna R, Zhao R, Colgan TJ, Hu HH, Bydder M, Yokoo T, Bashir MR, Middleton MS, Serai SD, Malyarenko D, Chenevert T, Smith M, Henderson W, Hamilton G, Shu Y, Sirlin CB, Tkach JA, Trout AT, Brittain JH, Hernando D, Reeder SB, RSNA Quantitative Imaging Biomarker Alliance - Proton Density Fat Fraction Biomarker Committee. Temperature-corrected proton density fat fraction estimation using chemical shift-encoded MRI in phantoms. Magn Reson Med. 2021 Jul; 86 (1):69-81 Epub 2021 Feb 09 View PubMed Hu HH, Yokoo T, Bashir MR, Sirlin CB, Hernando D, Malyarenko D, Chenevert TL, Smith MA, Serai SD, Middleton MS, Henderson WC, Hamilton G, Shaffer J, Shu Y, Tkach JA, Trout AT, Obuchowski N, Brittain JH, Jackson EF, Reeder SB, RSNA Quantitative Imaging Biomarkers Alliance PDFF Biomarker Committee. Linearity and Bias of Proton Density Fat Fraction as a Quantitative Imaging Biomarker: A Multicenter, Multiplatform, Multivendor Phantom Study. Radiology. 2021 Mar; 298(3):640-651. Epub 2021 Jan 19. View PubMed Kang D, Jo HJ, In MH, Yarach U, Meyer NK, Bardwell Speltz LJ, Gray EM, Trzasko JD, Huston Iii J, Bernstein MA, Shu Y. The benefit of high-performance gradients on echo planar imaging for BOLD-based resting-state functional MRI. Phys Med Biol. 2020 Nov 27; 65(23):235024. View PubMed In MH, Shu Y, Trzasko JD, Yarach U, Kang D, Gray EM, Huston J, Bernstein MA. Reducing PNS with minimal performance penalties via simple pulse sequence modifications on a high-performance compact 3T scanner. Phys Med Biol. 2020 Jul 31; 65 (15):15NT02 Epub 2020 July 31 View PubMed Kang D, Yarach U, In MH, Gray EM, Trzasko JD, Jo HJ, Shu Y, Huston J 3rd, Bernstein MA. The effect of spiral trajectory correction on pseudo-continuous arterial spin labeling with high-performance gradients on a compact 3T scanner. Magn Reson Med. 2020 Jul; 84 (1):192-205 Epub 2019 Dec 04 View PubMed Hobson N, Polster SP, Cao Y, Flemming K, Shu Y, Huston J, Gerrard CY, Selwyn R, Mabray M, Zafar A, Girard R, Carrion-Penagos J, Chen YF, Parrish T, Zhou XJ, Koenig JI, Shenkar R, Stadnik A, Koskimaki J, Dimov A, Turley D, Carroll T, Awad IA. Phantom validation of quantitative susceptibility and dynamic contrast-enhanced permeability MR sequences across instruments and sites. J Magn Reson Imaging. 2020 Apr; 51 (4):1192-1199 Epub 2019 Sept 12 View PubMed In MH, Tan ET, Trzasko JD, Shu Y, Kang D, Yarach U, Tao S, Gray EM, Huston J 3rd, Bernstein MA. Distortion-free imaging: A double encoding method (DIADEM) combined with multiband imaging for rapid distortion-free high-resolution diffusion imaging on a compact 3T with high-performance gradients. J Magn Reson Imaging. 2020 Jan; 51(1):296-310. Epub 2019 May 20. View PubMed Yarach U, Bernstein MA, Huston J, In MH, Kang D, Shu Y, Gray EM, Meyer N, Trzasko JD. Model-based iterative reconstruction for echo planar imaging: methods and applications Conference Record - Asilomar Conference on Signals, Systems and Computers. 2019 Nov; 2019-November:61-4 Tao S, Shu Y, Trzasko JD, Huston J, Bernstein MA. Partial fourier shells trajectory for non-cartesian MRI. Phys Med Biol. 2019 Feb 6; 64 (4):04NT01 Epub 2019 Feb 06 View PubMed Tao AT, Shu Y, Tan ET, Trzasko JD, Tao S, Reid RD, Weavers PT, Huston J 3rd, Bernstein MA. Improving apparent diffusion coefficient accuracy on a compact 3T MRI scanner using gradient nonlinearity correction. J Magn Reson Imaging. 2018 Dec; 48 (6):1498-1507 Epub 2018 Sept 26 View PubMed Foo TKF, Laskaris E, Vermilyea M, Xu M, Thompson P, Conte G, Van Epps C, Immer C, Lee SK, Tan ET, Graziani D, Mathieu JB, Hardy CJ, Schenck JF, Fiveland E, Stautner W, Ricci J, Piel J, Park K, Hua Y, Bai Y, Kagan A, Stanley D, Weavers PT, Gray E, Shu Y, Frick MA, Campeau NG, Trzasko J, Huston J 3rd, Bernstein MA. Lightweight, compact, and high-performance 3T MR system for imaging the brain and extremities. Magn Reson Med. 2018 Nov; 80 (5):2232-2245 Epub 2018 Mar 13 View PubMed Tan ET, Hardy CJ, Shu Y, In MH, Guidon A, Huston J 3rd, Bernstein MA, K F Foo T. Reduced acoustic noise in diffusion tensor imaging on a compact MRI system. Magn Reson Med. 2018 Jun; 79(6):2902-2911. Epub 2017 Oct 02. View PubMed Tillema JM, Weigand SD, Dayan M, Shu Y, Kantarci OH, Lucchinetti CF, Port JD. Dark Rims: Novel Sequence Enhances Diagnostic Specificity in Multiple Sclerosis. AJNR Am J Neuroradiol. 2018 Jun; 39 (6):1052-1058 Epub 2018 Apr 26 View PubMed Shu Y, Tao S, Trzasko JD, Huston J 3rd, Weavers PT, Bernstein MA. Magnetization-prepared shells trajectory with automated gradient waveform design. Magn Reson Med. 2018 Apr; 79 (4):2024-2035 Epub 2017 Aug 21 View PubMed Weavers PT, Tao S, Trzasko JD, Frigo LM, Shu Y, Frick MA, Lee SK, Foo TK, Bernstein MA. B0 concomitant field compensation for MRI systems employing asymmetric transverse gradient coils. Magn Reson Med. 2018 Mar; 79 (3):1538-1544 Epub 2017 June 21 View PubMed Tao S, Weavers PT, Trzasko JD, Huston J 3rd, Shu Y, Gray EM, Foo TKF, Bernstein MA. The effect of concomitant fields in fast spin echo acquisition on asymmetric MRI gradient systems. Magn Reson Med. 2018 Mar; 79 (3):1354-1364 Epub 2017 June 22 View PubMed Favazza CP, Edmonson HA, Ma C, Shu Y, Felmlee JP, Watson RE, Gorny KR. Evaluation of feasibility of 1.5 Tesla prostate MRI using body coil RF transmit in a patient with an implanted vagus nerve stimulator. Med Phys. 2017 Nov; 44 (11):5749-5754 Epub 2017 Oct 09 View PubMed In MH, Cho S, Shu Y, Min HK, Bernstein MA, Speck O, Lee KH, Jo HJ. Correction of metal-induced susceptibility artifacts for functional MRI during deep brain stimulation. Neuroimage. 2017 Sep; 158:26-36. Epub 2017 Jun 27. View PubMed Shan Q, Chen J, Zhang T, Yan R, Wu J, Shu Y, Kang Z, He B, Zhang Z, Wang J. Evaluating histologic differentiation of hepatitis B virus-related hepatocellular carcinoma using intravoxel incoherent motion and AFP levels alone and in combination. Abdom Radiol (NY). 2017 Aug; 42 (8):2079-2088 View PubMed Tillema JM, Weigand SD, Mandrekar J, Shu Y, Lucchinetti CF, Pirko I, Port JD. In vivo detection of connectivity between cortical and white matter lesions in early MS. Mult Scler. 2017 Jun; 23 (7):973-981 Epub 2016 Oct 03 View PubMed Tao S, Weavers PT, Trzasko JD, Shu Y, Huston J 3rd, Lee SK, Frigo LM, Bernstein MA. Gradient pre-emphasis to counteract first-order concomitant fields on asymmetric MRI gradient systems. Magn Reson Med. 2017 Jun; 77 (6):2250-2262 Epub 2016 July 04 View PubMed Weavers PT, Tao S, Trzasko JD, Shu Y, Tryggestad EJ, Gunter JL, McGee KP, Litwiller DV, Hwang KP, Bernstein MA. Image-based gradient non-linearity characterization to determine higher-order spherical harmonic coefficients for improved spatial position accuracy in magnetic resonance imaging. Magn Reson Imaging. 2017 May; 38:54-62 Epub 2016 Dec 27 View PubMed Raman MR, Shu Y, Lesnick TG, Jack CR, Kantarci K. Regional T(1) relaxation time constants in Ex vivo human brain: Longitudinal effects of formalin exposure. Magn Reson Med. 2017 Feb; 77 (2):774-778 Epub 2016 Feb 17 View PubMed Tao S, Trzasko JD, Gunter JL, Weavers PT, Shu Y, Huston J, Lee SK, Tan ET, Bernstein MA. Gradient nonlinearity calibration and correction for a compact, asymmetric magnetic resonance imaging gradient system. Phys Med Biol. 2017 Jan 21; 62 (2):N18-N31 Epub 2016 Dec 29 View PubMed Lee SK, Mathieu JB, Graziani D, Piel J, Budesheim E, Fiveland E, Hardy CJ, Tan ET, Amm B, Foo TK, Bernstein MA, Huston J 3rd, Shu Y, Schenck JF. Peripheral nerve stimulation characteristics of an asymmetric head-only gradient coil compatible with a high-channel-count receiver array. Magn Reson Med. 2016 Dec; 76 (6):1939-1950 Epub 2015 Dec 02 View PubMed Tan ET, Lee SK, Weavers PT, Graziani D, Piel JE, Shu Y, Huston J 3rd, Bernstein MA, Foo TK. High slew-rate head-only gradient for improving distortion in echo planar imaging: Preliminary experience. J Magn Reson Imaging. 2016 Sep; 44 (3):653-64 Epub 2016 Feb 26 View PubMed Tao S, Trzasko JD, Shu Y, Weavers PT, Huston J 3rd, Gray EM, Bernstein MA. Partial fourier and parallel MR image reconstruction with integrated gradient nonlinearity correction. Magn Reson Med. 2016 Jun; 75 (6):2534-44 Epub 2015 July 17 View PubMed Weavers PT, Shu Y, Tao S, Huston J 3rd, Lee SK, Graziani D, Mathieu JB, Trzasko JD, Foo TK, Bernstein MA. Technical Note: Compact three-tesla magnetic resonance imager with high-performance gradients passes ACR image quality and acoustic noise tests. Med Phys. 2016 Mar; 43 (3):1259-64 View PubMed Tao S, Trzasko JD, Shu Y, Huston J 3rd, Johnson KM, Weavers PT, Gray EM, Bernstein MA. NonCartesian MR image reconstruction with integrated gradient nonlinearity correction. Med Phys. 2015 Dec; 42 (12):7190-201 View PubMed Tao S, Trzasko JD, Shu Y, Huston J 3rd, Bernstein MA. Integrated image reconstruction and gradient nonlinearity correction. Magn Reson Med. 2015 Oct; 74 (4):1019-31 Epub 2014 Oct 08 View PubMed Shu Y, Gorny KR, Felmlee JP, Pooley RA, Edmonson HA. Practical considerations for ACR MRI accreditation. J Am Coll Radiol. 2014 Jan; 11(1):94-6. View PubMed Port JD, Rampton KE, Shu Y, Manduca A, Frye MA. Short TE (7) Li-MRS confirms Bi-exponential lithium T2 relaxation in humans and clearly delineates two patient subtypes. J Magn Reson Imaging. 2013 Jun; 37(6):1451-9. Epub 2012 Nov 12. View PubMed Gorny KR, Presti MF, Goerss SJ, Hwang SC, Jang DP, Kim I, Min HK, Shu Y, Favazza CP, Lee KH, Bernstein MA. Measurements of RF heating during 3.0-T MRI of a pig implanted with deep brain stimulator. Magn Reson Imaging. 2013 Jun; 31 (5):783-8 Epub 2012 Dec 07 View PubMed Leng S, Chen L, Shu Y, McCollough C. WE-D-213AB-03: Preparing for the ABR Diagnostic Medical Physics Board Exams - Oral Exam. Med Phys. 2012 Jun; 39 (6Part27):3954 View PubMed Kalamkar DD, Trzasko JD, Sridharan S, Smelyanskiy M, Kim D, Manduca A, Shu Y, Bernstein MA, Kaul B, Dubey P. High performance non-uniform FFT on modern X86-based multi-core systems. Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium, IPDPS 2012. 2012:449-60. Shu Y, Bernstein MA, Huston J 3rd, Rettmann D. Contrast-enhanced intracranial magnetic resonance angiography with a spherical shells trajectory and online gridding reconstruction. J Magn Reson Imaging. 2009 Nov; 30(5):1101-9. View PubMed Shu Y, Riederer SJ, Bernstein MA. Three-dimensional MRI with an undersampled spherical shells trajectory. Magn Reson Med. 2006 Sep; 56(3):553-62. View PubMed Shu Y, Elliott AM, Riederer SJ, Bernstein MA. Motion correction properties of the shells k-space trajectory. Magn Reson Imaging. 2006 Jul; 24(6):739-49. Epub 2006 Mar 20. View PubMed Bernstein MA, Shu Y, Elliott AM. RINGLET motion correction for 3D MRI acquired with the elliptical centric view order. Magn Reson Med. 2003 Oct; 50(4):802-12. View PubMed Shu Y, Zhang D, Qian X, Zhuang T. Data Warehouse Based Data Storage and Retrieval in PACS. Computer Applications Research. 1999. PST-20226704 Home Publications